So maybe "synced" wasn't a proper definition of the problem. They did the battery reset when it was jumped and that's when the connection with auto s/s was lost.I know but what he related is a bit difficult for me to understand. My guess is bad battery until I learn more.
I did ask about the battery life and it going bad soon, and I was assured that they tested the battery and it was good. The auto s/s has been working fine since I picked up the car from the dealer earlier today.. let's hope it continues that way.